FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14691819
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT145100.011.303343120
AGTGTAG207850.010.4351225118-119
GTGTAGA223200.010.147494120
GAGTGTA234050.010.113447120
AGAGTGT263800.09.724444120
TAGGGAA450450.09.456084120
AAGAGTG309950.09.187521120
GTAGGGA479000.09.093145120
TGTAGGG523700.08.638216120
TGTAGAT263050.08.633068120
GTAGATC240600.08.265022120
GTGTAGG576900.08.164454120
CGTGTAG621550.08.119231120
GGGAAAG467250.08.061761120
AGGGAAA514500.08.033685120
TCGTGTA664650.07.9633274120
GAAAGAG460050.07.561104120
AAAGAGT376250.07.552597120
GTCGTGT707550.07.463515120
CGTCGTG833800.07.1187987120
Produced by FastQC (version 0.11.5)