FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11850104
Sequences flagged as poor quality0
Sequence length55-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA523300.010.996422120
TGGTCGC368150.08.33744120
CGTATCA246550.07.9910793120
GTGGTCG404000.07.9841657120
GGTGGTC444200.07.897159120
TCTCGGT557250.07.7286863120
TAGATCT676200.07.7282414120
GGTCGCC371400.07.714595120
CTCGGTG542700.07.6259856120
GTATCAT251450.07.4053683120
ATCATTA216050.07.3954396120
TCGGTGG511200.07.367384120
TCATTAA181250.07.3240423120
CGGTGGT499700.07.2604604120
ATCTCGG605350.07.213806120
AGATCTC653850.07.2115417120
GATCTCG664100.07.073101120
GTCGCCG406050.06.8935513120
GCCGTAT319500.06.880925120
CGCCGTA326850.06.873212120
Produced by FastQC (version 0.11.5)