FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15707361
Sequences flagged as poor quality0
Sequence length54-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1849750.013.24702120
CCCCCCG8252.8067006E-911.6420091
GCGTCGG98450.09.277092120
CGTATCA806000.09.087672120
GTATCAT796050.09.027652120
TCATTAA642250.08.925411120
CGATCTA18850.08.9127315
GCCGTAT961500.08.72409120
CCGTATC895150.08.699477120
CATTAAA619450.08.633119120
CGCCGTA1019100.08.62604120
TCCGATC69950.08.577813
CCGATCT73250.08.2732834
ATCATTA720100.08.177438120
GGTCGCC1236400.08.135428120
TCGCCGT1137550.08.092305120
GTCGCCG1199800.08.023016120
GGTGGTC1499600.07.9937663120
TATCATT833250.07.93234120
TGGTCGC1304350.07.835995120
Produced by FastQC (version 0.11.5)