FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13268305
Sequences flagged as poor quality0
Sequence length53-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGTG467950.08.756272120
GTGGTCG330800.08.650693120
GGTCGCC300000.08.498958120
TGGTCGC300700.08.469198118-119
GGTGGTC372200.08.39768120
CGGTGGT419200.08.243264120
GTCGCCG315950.08.202824120
TCGGTGG432400.08.047116120
ATCTCGG525300.08.017292120
GCCGTAT248950.07.9765277120
CGCCGTA264300.07.80835120
TCTCGGT486450.07.775796118-119
CCGTATC241100.07.7136955120
CGTATCA197050.07.6722383120
TAGATCT596450.07.473306120
AGATCTC580000.07.4473624120
GATCTCG563000.07.4271536120
GTAGATC742250.07.403606120
AGTGTAG775100.07.3762083120
GTGTAGA756600.07.279044120
Produced by FastQC (version 0.11.5)