FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16487673
Sequences flagged as poor quality0
Sequence length51-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1297800.014.321658120
TCATTAA497300.010.797525120
GTATCAT687100.010.425672120
CATTAAA484050.010.337023120
ATCATTA574800.010.270651120
CGTATCA699950.010.242843120
CCGTATC834850.010.168752120
GCGTCGG148500.010.100274120
GCCGTAT887300.09.953068120
CGCCGTA971400.09.344594120
GGTCGCC1212150.09.201161120
TATCATT690500.09.175291120
TGGTCGC1260350.09.001606120
GTCGCCG1202450.08.726546120
TCGCCGT1107600.08.569257120
GTGGTCG1371200.08.444543120
GGTGGTC1483900.08.369227120
ATTAAAA558850.08.287847120
TCGGTGG1723750.08.1514015120
CGGTGGT1617450.07.9934826120
Produced by FastQC (version 0.11.5)