FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11216518
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC204200.088.427864120
GAGCACA344350.055.878426120
AGAGCAC474900.040.682766120
AAGAGCA681150.028.4852118-119
GAAGAGC776200.024.703054118-119
GGAAGAG956300.020.274426116-117
CGGAAGA1049950.018.252121116-117
TCGGAAG1143450.016.918335114-115
ATCGGAA1324250.015.796839120
GATCGGA1435800.014.783299120
AGATCGG1604400.013.7591505120
CACGTCT48200.013.030468120
TAGATCG447300.012.557413120
CACACGT49300.011.58157120
ACACGTC46100.011.291599118-119
CAGATCG479600.011.210519118-119
GAGATCG612750.011.170166120
TTAGATC161600.011.031439118-119
AAGATCG381150.010.954291120
ACGTCTG54000.010.5735445120
Produced by FastQC (version 0.11.5)