FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18499334
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG373650.09.845847120
GGTCGCC327900.09.7553625120
GGTGGTC409850.09.532651120
TGGTCGC338300.09.526423120
GCGTCGG100900.09.397742120
CTCGGTG527700.09.086933120
ATCTCGG608050.08.971854120
TCGGTGG499050.08.875031120
GATCTCG670100.08.857564120
TAGATCT707950.08.714614120
TCTCGGT558250.08.611155120
AGATCTC689700.08.2250395118-119
GTGTAGA935700.08.216184120
CCCCCCC8809.847485E-58.1814341
CGCCGTA299450.07.9565325120
CGGTGGT483150.07.8544407118-119
AAGAGTG1209950.07.7179112120
GAGTGTA1031750.07.6665254120
AGTGTAG962600.07.6072664118-119
GTAGATC925850.07.5192575120
Produced by FastQC (version 0.11.5)