FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17179364
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1659450.012.884017120
GCGTCGG129850.09.342753120
CGTATCA714200.09.04811120
CGCCGTA909250.08.831075120
CCGTATC810950.08.761049120
GTATCAT706200.08.71689120
GGTCGCC1109700.08.486057120
TCATTAA576200.08.484311120
ATCATTA666200.08.302722120
GCCGTAT858800.08.286894120
GTGGTCG1264050.08.0294895120
TGGTCGC1163650.07.9068203120
GGTGGTC1342350.07.8787813120
TCGCCGT1036700.07.861261120
GTCGCCG1109400.07.7791843120
CGGTGGT1473050.07.7627378120
CATTAAA561300.07.746562120
CTTGGGC62900.07.63408331
CTCGGTG1656800.07.626778120
TCGGTGG1561550.07.342019120
Produced by FastQC (version 0.11.5)