FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15946868
Sequences flagged as poor quality0
Sequence length52-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCCCA3150.001472565313.3333391
AAAAAAA1376950.012.713816120
GCGTCGG101450.011.476443120
CGTATCA639700.010.882767120
CGCCGTA816250.010.286135120
CCGTATC724550.09.964487120
GGTCGCC1028600.09.778791120
TCGCCGT934300.09.731593120
GTATCAT628150.09.716621120
GTCGCCG996050.09.706711120
TCTCGGG34350.09.609342120
GCCGTAT766800.09.540678120
TGGTCGC1110000.09.526659120
CCCTAGT5050.0044999289.5049541
GTGGTCG1206050.09.444709120
ATCATTA558000.09.152781120
TCATTAA489900.09.114297120
GGTGGTC1301400.08.937182120
TATCATT664600.08.903776120
CGGTGGT1433600.08.766099120
Produced by FastQC (version 0.11.5)