FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12653013
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGTG334150.07.900459120
TCTCGGT349700.07.8236666120
GTGGTCG258850.07.718576120
AGATCTC408950.07.7171454120
TGGTCGC242600.07.6420317120
TAGATCT422200.07.631276120
GGTGGTC285650.07.5195165120
TCGGTGG312150.07.477120
AAAAAAA515400.07.357221120
AGTGTAG552500.07.2106915120
GAGTGTA587300.07.1818523120
GATCTCG401400.07.070089120
ATCTCGG384500.07.069454118-119
GGTCGCC243450.06.8759956120
GTGTAGA535500.06.8121657120
AGAGTGT621200.06.799584120
TGTAGAT556150.06.796569120
GTAGATC541100.06.7194886120
CGGTGGT331650.06.693648120
CGTATCA181100.06.411307118-119
Produced by FastQC (version 0.11.5)