FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15177270
Sequences flagged as poor quality0
Sequence length56-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC87250.019.1165833
CCGATCT86100.019.0235634
CGATCTA21500.018.1387465
CTTCCGA131300.012.7082031
AAAAAAA1406850.012.331494120
CGTATCA605250.09.56441120
TTCCGAT178500.09.41132452
CCGTATC683800.09.405379120
GCCGTAT739300.09.324749120
GCGTCGG112450.09.238525120
CGCCGTA792950.09.034635120
GTATCAT597650.08.962598120
GATCTAG12853.6288839E-98.8712096
TGGTCGC1002150.08.574779120
GGTGGTC1163400.08.5218525120
GTCGCCG960000.08.46961120
ATCATTA544600.08.435285120
GTGGTCG1084250.08.407334120
GGTCGCC953300.08.359057120
TCATTAA480450.08.274195120
Produced by FastQC (version 0.11.5)