FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14945394
Sequences flagged as poor quality0
Sequence length53-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG74900.010.174671120
TAGATCT387850.08.633142120
AGTGTAG531150.08.608673120
GATCTCG371250.08.550425120
TGGTCGC198500.08.524857120
ATCTCGG345600.08.50787120
GTGGTCG213850.08.474151120
AGATCTC377700.08.467958120
TCTCGGT312600.08.407824120
GTGTAGA514200.08.332294120
GAGTGTA569150.08.276399120
CTCGGTG296900.08.124831120
TCGGTGG289050.08.1171255120
AGAGTGT622850.07.9674716120
GGTGGTC242050.07.7843623120
AAGAGTG696550.07.520737120
GTAGATC514900.07.365338120
GGTCGCC200150.07.34529120
TGTAGAT556050.07.3382683120
GTAGGGA1013050.07.2561073120
Produced by FastQC (version 0.11.5)