FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13719953
Sequences flagged as poor quality0
Sequence length57-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT345400.08.528507120
AGTGTAG446600.07.9824324120
GAGTGTA475200.07.9068384120
AGAGTGT526650.07.7165623120
GTGTAGA445950.07.6031265120
ATCTCGG348950.07.528657120
AGATCTC359500.07.424775120
TCTCGGT302050.07.4238515120
GTAGATC448050.07.366227120
GGTGGTC233250.07.3197455120
AAGAGTG583600.07.190174120
CGGTGGT263250.07.079337120
TCGGTGG276100.07.0764623120
GTAGGGA831800.07.053914120
AGGGAAA862000.06.9671874120
TAGGGAA803050.06.922239118-119
GTGTAGG955650.06.850595120
TGTAGGG881200.06.842672120
CTCGGTG304900.06.822098120
TGTAGAT483500.06.676934120
Produced by FastQC (version 0.11.5)