FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13354324
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA2560050.015.775923120
GCGTCGG70050.014.131065120
TCTCGGG28400.010.773355120
TCATTAA844300.09.954981120
CATTAAA798700.09.809764120
ATCATTA949800.09.329265120
CGTATCA1115300.09.273521120
GTATCAT1084200.09.041527120
CCGTATC1224850.08.914307120
CGCCGTA1395550.08.649314120
GCCGTAT1307400.08.599243120
TATCATT1076350.08.488785120
ATTAAAA872950.08.219415120
TCGCCGT1518750.08.133345120
TTAAAAA862400.08.104314120
GTCGCCG1604600.07.8290486120
GGTCGCC1683350.07.6659346120
TGGTCGC1787550.07.5815353120
TAAAAAA912250.07.5693846120
GGTGGTC2038750.07.238861120
Produced by FastQC (version 0.11.5)