FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13813542
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC151700.068.783585120
GAGCACA233850.043.899273120
AGAGCAC313350.033.407352120
AAGAGCA510300.022.403929120
GAAGAGC543150.020.415598120
GGAAGAG685750.016.539211118-119
TCGGAAG787650.014.35732116-117
CGGAAGA801350.014.019274116-117
GATCGGA953250.012.018896114-115
ATCGGAA957300.011.72143114-115
AGATCGG997950.011.176785112-113
TAGATCG262550.010.932239112-113
ACACGTC44750.010.400066120
CTAGATC67600.09.729479110-111
CACACGT45000.09.442959120
GAGATCG335800.08.627878112-113
AAGATCG398050.08.608899112-113
TTAGATC119200.08.544837116-117
CAGATCG315950.07.856212118-119
CACGTCT51550.07.392708118-119
Produced by FastQC (version 0.11.5)