FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14189261
Sequences flagged as poor quality0
Sequence length52-126
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGTAG453700.09.774734120
GAGTGTA487300.09.433257120
ATCTCGG272250.09.323989120
TAGATCT325450.09.29342120
AGATCTC298900.09.275671120
GTGGTCG169550.09.237874120
AAGAGTG597350.09.081736120
GTAGATC436350.08.925633120
GTGTAGA439000.08.885424120
CTCGGTG243800.08.861314120
GATCTCG303950.08.825406120
GGTGGTC193250.08.7570715120
TCTCGGT245700.08.695091120
TGGTCGC151550.08.632366120
AGAGTGT532900.08.603536120
TCGGTGG222050.08.323945120
GGTCGCC158300.08.112639120
GCGTCGG78400.07.8840704120
TGTAGAT496200.07.6676416120
CGGTGGT218400.07.5548916118-119
Produced by FastQC (version 0.11.5)