FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12951456
Sequences flagged as poor quality0
Sequence length61-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG356000.09.521565120
GGTGGTC384950.09.491238120
CTCGGTG502700.09.261104120
GATCTCG644000.09.250671120
TCTCGGT532800.09.199574120
AGATCTC661150.09.119603120
TAGATCT701950.09.102345120
GGTCGCC321850.09.077898120
TGGTCGC328350.08.971279120
GCGTCGG86100.08.849331120
CGGTGGT437700.08.840831120
AGTGTAG954650.08.659942120
CGTATCA204950.08.547612120
ATCTCGG587250.08.510045120
TCGGTGG458750.08.448242120
GCCGTAT279200.08.294339120
GTGTAGA907700.08.281683120
CGCCGTA301350.08.182396120
GTAGATC880750.08.08552120
TGTAGAT917050.07.974814120
Produced by FastQC (version 0.11.5)