FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11862904
Sequences flagged as poor quality0
Sequence length50-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC142650.070.06155120
GAGCACA219150.045.604744120
AGAGCAC283800.035.240376118-119
AAGAGCA428100.024.005331120
GAAGAGC482300.020.744602116-117
GGAAGAG602250.017.349735120
TCGGAAG688150.015.154062118-119
CGGAAGA705700.014.943047120
ATCGGAA810950.012.808297120
GATCGGA827800.012.805522120
CTAGATC44450.011.700299114-115
AGATCGG921300.011.423748118-119
TAGATCG200300.010.763899116-117
TTAGATC60350.09.415925118-119
ACACGTC36700.09.196321120
CCTAGAT16700.09.074611114-115
GAGATCG435300.08.60837112-113
TCTAGAT20350.08.4617405120
CACACGT31150.08.181403120
CAGATCG365450.08.047967118-119
Produced by FastQC (version 0.11.5)