FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15386600
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG105850.011.005676120
AAAAAAA1170850.010.24195120
TGGTCGC668300.08.733748120
CGTATCA432350.08.555612120
GTGGTCG727150.08.208584120
GGTCGCC648300.08.058405120
CGCCGTA563400.07.748603120
GGTGGTC785850.07.7253356120
TCGGTGG906650.07.7093744120
GTATCAT453800.07.6483755120
CTCGGTG959700.07.6461287120
GCCGTAT533950.07.5124526120
TCTCGGT1007400.07.3138905120
CCGTATC517200.07.302944120
CGGTGGT874350.07.279917120
TAGATCT1253450.07.219583120
ATCTCGG1080750.07.20088120
GTCGCCG666050.07.122396120
TCGCCGT638000.07.040229120
AGATCTC1196050.06.9736276120
Produced by FastQC (version 0.11.5)