FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11899492
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCT78500.020.4855614
TCCGATC87850.019.6713163
CTTCCGA110200.018.9483451
CGATCTA21500.017.024495
AAAAAAA1393150.013.849826120
TTCCGAT166350.012.7689172
TCATTAA479550.010.437426120
CGTATCA629650.010.332164120
CCGTATC708150.010.119062120
GCCGTAT763900.09.7891120
GTATCAT617100.09.754536120
ATCATTA545450.09.71554120
CGCCGTA818900.09.351495120
CATTAAA464000.09.157492120
TGGTCGC1082800.09.017798120
GGTCGCC1013800.09.004055120
GCGTCGG77150.08.945881120
GGTGGTC1258100.08.910929120
GTGGTCG1173650.08.84133120
TATCATT651100.08.811937120
Produced by FastQC (version 0.11.5)