FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14144491
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGTCGC196850.08.685595120
TAGATCT361150.08.488352120
GTGTAGA475950.08.356844120
AGATCTC358550.08.240368118-119
ATCTCGG355550.08.233969120
GATCTCG371550.08.121586120
TCGGTGG286900.07.924991120
AGTGTAG486100.07.849131120
GTAGATC469500.07.7305403120
CTAGTCG3550.0083090937.607897350-51
TGTAGAT494850.07.564863120
TCTCGGT327400.07.5493336120
GTGGTCG218200.07.547058118-119
GGTGGTC242500.07.545329120
GAGTGTA529000.07.507449120
AGAGTGT574800.07.4832883120
CTCGGTG321050.07.41836120
GGTCGCC205600.07.4114075120
AAGAGTG635700.07.28543120
CGGTGGT284250.07.1968756120
Produced by FastQC (version 0.11.5)