FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12925284
Sequences flagged as poor quality0
Sequence length59-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGTCGC259650.08.479808120
GCGTCGG74800.08.100802120
GTGGTCG283400.07.875015120
GGTGGTC305150.07.5692987120
TAGATCT483300.07.3984120
TCTCGGT386000.07.3049765120
AGATCTC480250.07.245509120
CGGTGGT347200.07.188229120
GTGTAGA605450.07.174119120
GAGTGTA651300.07.0928035120
TCGGTGG360750.07.0512776120
GCCGTAT234000.07.050585120
ATCTCGG421300.07.006191120
CTCGGTG380150.06.9755034120
GATCTCG474900.06.948144120
CGTATCA191200.06.93446120
AGTGTAG613400.06.8757463120
GTAGATC627700.06.8720303120
GGTCGCC254450.06.8611803118-119
AGAGTGT700750.06.823442120
Produced by FastQC (version 0.11.5)