FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14815148
Sequences flagged as poor quality0
Sequence length50-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC198700.087.6639120
GAGCACA327550.051.85692120
AGAGCAC436700.039.4085118-119
AAGAGCA645000.027.222147120
GAAGAGC773250.022.346495116-117
GGAAGAG914350.019.484005120
CGGAAGA1058350.016.916224120
TCGGAAG1079350.016.624577118-119
ATCGGAA1241150.014.164593116-117
GATCGGA1288500.013.988733116-117
AGATCGG1428100.012.531297120
TAGATCG302250.011.767288114-115
CTAGATC71200.011.752973116-117
AAGATCG490150.010.49127114-115
TTAGATC96350.010.437386118-119
GCTAGAT26050.010.285089116-117
CACACGT54550.09.957674120
CCTAGAT23600.09.953488112-113
GAGATCG534650.09.947322112-113
CACGTCT63100.09.306397120
Produced by FastQC (version 0.11.5)