FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15221166
Sequences flagged as poor quality0
Sequence length63-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT343100.010.317069120
AGATCTC324600.09.980912120
CTCGGTG265900.09.476674120
GATCTCG306000.09.313163120
GTGTAGA485400.09.06002120
AGTGTAG496100.08.900893120
GTGGTCG188600.08.811769120
ATCTCGG302000.08.780926120
AGAGTGT574500.08.615667120
GAGTGTA528950.08.586304120
TCTCGGT278100.08.489364118-119
TCGGTGG262700.08.336002120
GGTGGTC213400.08.0407505120
GTAGATC480950.08.033614120
GTCGCCG186150.07.8319197120
AAGAGTG647950.07.8149457120
TGGTCGC171100.07.661836118-119
TGTAGAT516100.07.614343120
GGTCGCC171200.07.5872707118-119
AAAGAGT757850.07.3387394120
Produced by FastQC (version 0.11.5)