FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15083820
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC163100.069.787384120
GAGCACA256850.044.008907120
AGAGCAC347900.035.69323120
AAGAGCA561900.021.509768118-119
GAAGAGC605400.020.066906118-119
GGAAGAG771500.015.7302685120
TCGGAAG879300.014.472489120
CGGAAGA911900.013.490825116-117
GATCGGA1019300.012.422437118-119
ATCGGAA1065400.011.901435120
AGATCGG1120100.011.164307116-117
TAGATCG280650.010.818842116-117
CTAGATC65600.09.825334114-115
GAGATCG416100.08.924749118-119
AAGATCG403300.08.822723120
TTAGATC119900.08.704752114-115
CACGTCT50200.07.821236118-119
CAGATCG344350.07.809739110-111
TCTAGAT38100.07.213388114-115
CCTAGAT24650.07.1674027114-115
Produced by FastQC (version 0.11.5)