FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13271129
Sequences flagged as poor quality0
Sequence length52-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1118750.013.429173120
GCGTCGG78150.010.518155120
CGTATCA510300.09.018156120
CGCCGTA652350.08.985906120
TGGTCGC827100.08.8211155120
TCATTAA420500.08.78947120
GTCGCCG772700.08.572474120
GGTCGCC790750.08.566486120
CCGTATC593150.08.547521120
GTGGTCG899600.08.43035120
GCCGTAT616450.08.312047120
GTATCAT511500.08.164161120
CATTAAA396950.07.950563120
TCGCCGT726400.07.9211955120
GGTGGTC964650.07.728133118-119
ATCATTA488150.07.6451335120
CTCGGTG1180850.07.6418953120
CGGTGGT1052850.07.510985120
TCGGTGG1113750.07.5097075120
TATCATT555300.07.487788120
Produced by FastQC (version 0.11.5)