FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15529739
Sequences flagged as poor quality0
Sequence length50-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA260800.09.848916120
GTGGTCG495750.09.551388120
GGTCGCC443650.09.266213120
TGGTCGC442100.09.162954120
GGTGGTC529800.09.118768120
CGGTGGT606450.08.916245120
TCGGTGG638400.08.733233120
CTCGGTG692250.08.470008120
TAGATCT901750.08.445545120
ATCTCGG779600.08.437056120
CCGTATC337450.08.305383120
TCTCGGT720600.08.27836120
GTATCAT285050.08.210995120
AAAAAAA643300.08.200258120
GCCGTAT354950.07.8451824120
AGATCTC874550.07.822984120
GATCTCG881250.07.8111777120
CGCCGTA385850.07.543545120
AGTGTAG1171000.07.4517746120
GAGTGTA1243700.07.382918120
Produced by FastQC (version 0.11.5)