FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15915128
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC243100.0117.393135120
GAGCACA415600.069.82621120
AGAGCAC565250.051.047867118-119
AAGAGCA852150.034.26216118-119
GAAGAGC938900.030.60962118-119
GGAAGAG1132350.025.615864116-117
CGGAAGA1319350.021.890299114-115
TCGGAAG1365650.021.22929114-115
CACGTCT63850.021.028202120
CACACGT59800.020.28454120
ACACGTC64850.019.990015120
ATCGGAA1592750.018.271814112-113
GATCGGA1636950.017.82922112-113
AGATCGG1781350.016.373577112-113
TAGATCG445300.015.335137110-111
CTAGATC102000.013.896659110-111
CAGATCG597800.013.423509110-111
GAGATCG581700.013.239724112-113
ACGTCTG81100.013.13022120
AAGATCG553000.012.949675110-111
Produced by FastQC (version 0.11.5)