FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12587555
Sequences flagged as poor quality0
Sequence length59-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA861750.010.965111120
GCCGTAT447850.09.243369120
CGTATCA360350.08.990482120
CGCCGTA478900.08.9321995120
CCGTATC429100.08.76643120
GGTCGCC567350.08.586551120
GTCGCCG565250.08.565381120
TCATTAA304450.08.45386120
TGGTCGC593350.08.432743120
GTGGTCG636300.08.419829120
GTATCAT379100.08.403389120
TCGCCGT533850.08.068986120
GGTGGTC689200.07.8257895120
CGGTGGT769450.07.586582120
TATCATT425850.07.5653915120
GCGTCGG76750.07.504238120
ATCATTA347250.07.4982724120
TCGGTGG797000.07.482415120
TCTCGGT893100.07.3759165120
CTCGGTG849200.07.227355120
Produced by FastQC (version 0.11.5)