FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12649600
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC207150.097.73544120
GAGCACA340550.058.338005120
AGAGCAC458000.043.809574118-119
AAGAGCA673150.030.467909120
GAAGAGC773250.025.980543118-119
GGAAGAG915450.021.931421118-119
CGGAAGA1061850.019.096489116-117
TCGGAAG1098550.018.293846116-117
CACGTCT63100.018.01378120
ATCGGAA1283200.015.930056114-115
CACACGT62850.015.333304120
GATCGGA1336400.015.215917114-115
AGATCGG1467450.013.935134112-113
ACACGTC72800.013.803322120
TAGATCG379800.012.794499110-111
CGTCTGA91700.012.126056120
ACGTCTG81050.012.09342120
CTAGATC90350.011.694107108-109
GAGATCG536300.011.437774114-115
CAGATCG511750.011.222955112-113
Produced by FastQC (version 0.11.5)