FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11624245
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTGGTC408500.09.576055120
GGTCGCC323450.08.959239120
CGCCGTA265750.08.80486120
TGGTCGC333000.08.7563505120
CTCGGTG509700.08.734144120
GCCGTAT255000.08.587837120
GTCGCCG324000.08.518124120
TCGGTGG480750.08.498826120
TAGATCT680350.08.492293120
TCTCGGT534150.08.401745120
AGATCTC653250.08.220055120
CGTATCA213200.08.217255120
GTGGTCG370150.08.120655120
AAAAAAA597750.08.110038120
ATCTCGG582800.08.040121120
GATCTCG632650.07.890253120
CGGTGGT451600.07.8782883120
CCGTATC248150.07.80943120
GTGTAGA856900.07.582796120
TCGCCGT318300.07.520858120
Produced by FastQC (version 0.11.5)