Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004831897 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11861585 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-126 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCACAC | 15680 | 0.0 | 86.477165 | 120 |
GAGCACA | 24780 | 0.0 | 52.395992 | 120 |
AGAGCAC | 32540 | 0.0 | 40.864765 | 118-119 |
AAGAGCA | 48485 | 0.0 | 27.118217 | 120 |
GAAGAGC | 56270 | 0.0 | 23.830502 | 116-117 |
GGAAGAG | 68750 | 0.0 | 19.091463 | 118-119 |
CGGAAGA | 79795 | 0.0 | 16.931417 | 114-115 |
TCGGAAG | 80705 | 0.0 | 16.105684 | 116-117 |
ATCGGAA | 94545 | 0.0 | 14.247005 | 112-113 |
CGATCTA | 1995 | 0.0 | 13.830177 | 5 |
GATCGGA | 94655 | 0.0 | 13.708407 | 114-115 |
AGATCGG | 103225 | 0.0 | 13.00564 | 110-111 |
TAGATCG | 28020 | 0.0 | 12.091454 | 112-113 |
TCCGATC | 7230 | 0.0 | 11.906578 | 3 |
CCGATCT | 7070 | 0.0 | 11.785775 | 4 |
CTAGATC | 5730 | 0.0 | 10.833144 | 114-115 |
TTAGATC | 7970 | 0.0 | 9.8998575 | 118-119 |
GAGATCG | 34125 | 0.0 | 9.709195 | 110-111 |
AAGATCG | 33730 | 0.0 | 9.600694 | 114-115 |
ACACGTC | 4680 | 0.0 | 9.428787 | 120 |