FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15098932
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC147450.070.16518120
GAGCACA229850.046.27926120
AGAGCAC316400.035.859665120
AAGAGCA495050.022.678064120
GAAGAGC553750.020.453194118-119
GGAAGAG679400.016.59741118-119
TCGGAAG793950.014.882882120
CGGAAGA811400.014.391388120
ATCGGAA945950.012.736493120
GATCGGA946900.012.611797120
AGATCGG1041450.011.495256118-119
TAGATCG273650.011.303341120
CTAGATC62250.010.160726114-115
TTAGATC109300.09.028732114-115
AAGATCG435000.08.404824118-119
GAGATCG394900.08.369486120
CAGATCG349400.07.525605116-117
ATAGATC138650.07.308872118-119
TAAGATC167350.07.0248694110-111
CCTAGAT19950.06.972123108-109
Produced by FastQC (version 0.11.5)