FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12407117
Sequences flagged as poor quality0
Sequence length54-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTGTA397150.09.578706120
GTGTAGA362850.09.475446120
AGATCTC263050.09.466336120
AGTGTAG367400.09.358098120
TAGATCT258250.09.247298120
AGAGTGT437500.09.202729120
AAGAGTG491000.08.884337120
GTAGATC374700.08.6953745120
TGTAGAT386800.08.485414120
TCTCGGT225450.08.250564120
ATCTCGG259100.08.035893120
TGTAGGG808950.08.018186120
GGTGGTC171050.07.962967120
GTAGGGA754950.07.9081893120
TAGGGAA717050.07.8408346120
GATCCTA20801.8189894E-127.7903121
CTCGGTG228350.07.7779083120
GATCCTG101300.07.6424871
AAAGAGT572050.07.6360636120
TCGGTGG207050.07.4768147120
Produced by FastQC (version 0.11.5)