FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11468250
Sequences flagged as poor quality0
Sequence length126
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT186450.011.554374120
AGATCTC182400.011.416133120
AGTGTAG290550.011.276807120
GTGTAGA281150.010.992171120
GAGTGTA324500.010.078506120
AGAGTGT356500.09.678826120
GTAGATC286750.09.584654120
GATCTCG181050.09.446278120
ATCTCGG181700.09.412485120
AAGAGTG421900.09.216794120
TAGGGAA621900.08.858017120
GTAGGGA653850.08.792285120
CTCGGTG156600.08.583623120
GGGAAAG583000.08.502093120
TGTAGAT323750.08.489265120
AAAGAGT496700.08.336223120
TGTAGGG704950.08.197517120
GTGTAGG768050.08.047521120
CGTGTAG814800.07.998216120
TCTCGGT168250.07.953608120
Produced by FastQC (version 0.11.5)