FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14381268
Sequences flagged as poor quality0
Sequence length51-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCTC376350.09.43816120
GAGTGTA565450.08.786051120
TCGGTGG272800.08.709804120
CTCGGTG297650.08.60755120
GTGTAGA517650.08.530984120
TGGTCGC191800.08.477704120
TAGATCT390000.08.446277120
AGTGTAG530750.08.433472120
AGAGTGT614850.08.382653120
ATCTCGG337000.08.279052120
CGGTGGT269500.08.259859120
TCTCGGT306300.08.246937120
GTGGTCG208150.08.244174120
AAGAGTG684400.08.162011120
GGTCGCC198200.08.082863120
GATCTCG367900.07.9588120
GGTGGTC227750.07.850827120
GTAGATC514450.07.662663120
TAGGGAA964400.07.6027646120
GGGAAAG920150.07.4401994120
Produced by FastQC (version 0.11.5)