FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15537955
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA2157900.014.232649120
TCTCGGG30000.012.599439120
GCGTCGG73100.010.587764120
CGTATCA985050.09.373727120
GTATCAT989200.09.146378120
TCATTAA789900.09.091885120
CCGTATC1096150.09.047629120
ATCATTA909950.08.86163120
CGCCGTA1222900.08.742763120
GCCGTAT1160050.08.688893120
CATTAAA771700.08.536616120
GTCGCCG1416700.08.364137120
TCGCCGT1330850.08.313114120
TGGTCGC1597950.08.256461120
GGTCGCC1494200.08.147141120
TATCATT1033550.08.063111120
GTGGTCG1713000.07.7965120
GGTGGTC1836550.07.680364120
ATTAAAA941050.07.1597686120
TCGGTGG2095100.07.147789120
Produced by FastQC (version 0.11.5)