FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13776594
Sequences flagged as poor quality0
Sequence length56-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG90900.08.327302120
TAGATCT484950.07.7053266120
GGTGGTC322350.07.4919696120
TCGGTGG378550.07.427116120
TGGTCGC273350.07.406422120
AAAAAAA631000.07.2928457120
GTGGTCG292900.07.2607503120
CGGTGGT376300.07.2160883120
GTGTAGA601050.07.1065145120
ATCTCGG454550.07.0972524120
CTCGGTG414200.06.9038997120
AGTGTAG605000.06.901239120
TCTCGGT409100.06.8487678118-119
GAGTGTA643000.06.6055055120
CGTATCA198400.06.6010413120
AGATCTC486700.06.5210776118-119
GTAGATC609600.06.474676120
TCATTAA182500.06.451947120
GGTCGCC282650.06.291299120
AGAGTGT688250.06.258504120
Produced by FastQC (version 0.11.5)