FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11221681
Sequences flagged as poor quality0
Sequence length52-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGTGT209050.010.188204120
GTGTAGA173750.010.186304120
TAGATCT112500.010.18592120
AGTGTAG169800.09.9286120
GAGTGTA185550.09.700178120
GTAGGGA382900.09.463918120
AAGAGTG243000.09.406718120
AGATCTC119950.09.153143120
CGTGTAG491700.09.06584120
GTGTAGG458100.08.971183120
TGTAGGG412200.08.951309120
GTAGATC187250.08.811103120
TAGGGAA367100.08.678198120
TCGTGTA529400.08.363573120
GTCGTGT559850.08.348053120
TCTCGGT100650.08.106709120
CTCGGTG101550.07.9757814120
TGTAGAT209000.07.922865120
GGGAAAG407500.07.700049120
AGCGTCG699850.07.689656120
Produced by FastQC (version 0.11.5)