FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14652728
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC141450.066.6424120
GAGCACA220200.043.13365120
AGAGCAC296650.034.03242120
AAGAGCA460550.022.612204120
GAAGAGC544200.019.613956120
GGAAGAG679950.015.898734120
TCGGAAG777300.013.904486118-119
CGGAAGA800750.013.8248120
GATCGGA915750.012.521431120
ATCGGAA915950.012.511603120
AGATCGG1012750.011.58515120
CTAGATC61850.011.0725355116-117
TAGATCG262300.010.947379120
TTAGATC97250.09.886858120
GAGATCG390950.09.165312118-119
CCTAGAT22350.08.858428116-117
AAGATCG317750.08.730287120
GCTAGAT22650.08.317944120
CAGATCG393850.08.115596120
CCCTAGA7358.747338E-87.949001114-115
Produced by FastQC (version 0.11.5)