FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18133126
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG628400.09.36583120
GGTCGCC551550.09.354638120
GGTGGTC680600.09.299808120
TGGTCGC572900.09.236411120
CGGTGGT770950.08.855834120
CTCGGTG891700.08.834041120
TCGGTGG818050.08.763983120
AAAAAAA931900.08.704039120
CGTATCA359050.08.655423120
GCGTCGG117950.08.545251120
ATCTCGG1004400.08.535697120
CGCCGTA466900.08.429337120
TAGATCT1190250.08.286613120
CCGTATC429400.08.229372120
TCTCGGT929600.08.070489118-119
GTCGCCG581100.08.05299120
GATCTCG1108950.08.006878120
GCCGTAT446850.08.001988120
AGATCTC1143250.07.7614064120
TCGCCGT557850.07.495987120
Produced by FastQC (version 0.11.5)