FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12034944
Sequences flagged as poor quality0
Sequence length50-126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC115350.057.316345120
GAGCACA174900.038.463795120
AGAGCAC234850.029.165987120
AAGAGCA355350.019.450539118-119
GAAGAGC416750.017.439898120
GGAAGAG479350.015.296659120
TCGGAAG561750.014.095733120
CGGAAGA565150.013.555291120
ATCGGAA667200.012.128438120
GATCGGA677750.011.930146120
AGATCGG760700.010.874651120
TAGATCG150450.09.974066118-119
CACACGT44000.09.949056120
CTAGATC37850.09.508186112-113
TTAGATC51600.08.655809114-115
CACGTCT48150.08.021961120
CCTAGAT13850.07.8881416112-113
GAGATCG369950.07.565256116-117
GCTAGAT17400.07.3867993112-113
AAGATCG277450.07.076862120
Produced by FastQC (version 0.11.5)