FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18243666
Sequences flagged as poor quality0
Sequence length59-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1451100.012.5976715120
CGTATCA620450.08.750984120
GTATCAT639050.08.4024120
CGCCGTA816750.08.38865120
CATTAAA479550.08.369651120
GCCGTAT755400.08.243954120
TCATTAA497200.08.000139120
CCGTATC715250.07.993743120
TATCATT675600.07.9833508120
TGGTCGC997250.07.977276120
ATCATTA572600.07.9001465120
GGTCGCC968700.07.822205120
GTCGCCG968800.07.6851583120
GGTGGTC1159050.07.57799120
GTGGTCG1092850.07.504523120
CGGTGGT1254750.07.4351263120
TCGCCGT931600.07.373797120
TCGGTGG1313750.07.233651120
TCTCGGT1479700.07.107607120
ATCTCGG1585100.07.0929694120
Produced by FastQC (version 0.11.5)