FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16076533
Sequences flagged as poor quality0
Sequence length56-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG93800.012.281231120
TAGATCT637550.08.808564120
TGGTCGC319250.08.7202835120
GGTCGCC316100.08.6553335120
TCGGTGG472700.08.567649120
CTCGGTG498350.08.487859120
GATCTCG597900.08.359108120
ATCTCGG562750.08.188215120
AGATCTC613250.08.071605120
GTGGTCG347750.08.04893118-119
GGTGGTC395450.08.026156120
TCTCGGT516100.08.01012118-119
AGTGTAG849400.07.78418120
GTGTAGA822150.07.7502728120
GAGTGTA912350.07.7468886120
GTAGATC805500.07.381619120
AGAGTGT983150.07.3171663120
TGTAGAT851900.07.254243120
AAGAGTG1071850.06.9467435120
GTCGCCG350650.06.9298635120
Produced by FastQC (version 0.11.5)