FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12562331
Sequences flagged as poor quality0
Sequence length50-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC136250.063.97344120
GAGCACA204200.041.51561120
AGAGCAC270250.031.966333118-119
AAGAGCA413000.021.034689118-119
GAAGAGC478200.018.484015120
GGAAGAG582800.016.374096120
TCGGAAG677150.013.60158118-119
CGGAAGA692950.013.272814118-119
GATCGGA790600.012.650189120
ATCGGAA782100.011.995152120
AGATCGG888300.011.418761120
TAGATCG176500.011.303585120
CTAGATC45600.010.477781118-119
TTAGATC61800.09.508365110-111
GAGATCG365200.08.822104120
CCTAGAT15350.08.413163112-113
AAGATCG334100.08.1942625114-115
ATAGATC77150.07.950421120
CAGATCG365700.07.8919625120
GCTAGAT20000.07.748217114-115
Produced by FastQC (version 0.11.5)