FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14326497
Sequences flagged as poor quality0
Sequence length60-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1799350.014.308453120
GCGTCGG72450.012.587949120
CGTATCA786000.09.435082120
ATCATTA687650.09.292487120
TCATTAA607200.09.2489805120
CATTAAA594000.08.989869120
CCGTATC878500.08.988017120
GTATCAT772000.08.883389120
TCTCGGG30550.08.83794120
GCCGTAT937350.08.55174120
CGCCGTA993150.08.476033120
GTCGCCG1169900.08.426332120
TATCATT793150.08.343917120
TCGCCGT1101600.08.218926120
TGGTCGC1276850.07.9977803120
GGTCGCC1209150.07.894748118-119
GTGGTCG1368200.07.4681816120
ATTAAAA686200.07.3010535120
GGTGGTC1462300.07.2789197120
CGGTGGT1577600.07.1614866120
Produced by FastQC (version 0.11.5)