FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11993644
Sequences flagged as poor quality0
Sequence length52-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTGGTC294950.09.131975120
TGGTCGC243800.08.95642120
TCGGTGG348750.08.910094120
GTGGTCG264400.08.576244120
TAGATCT498750.08.479554120
GGTCGCC243450.08.476478120
CTCGGTG383050.08.394138120
GCGTCGG74050.08.3440895120
ATCTCGG435450.08.320807120
CGGTGGT341750.08.267594120
TCTCGGT396750.08.1950035120
GATCTCG470150.08.012904120
AGTGTAG656000.07.928335120
GTGTAGA639200.07.8270135120
GCCGTAT215150.07.779105120
AGATCTC481450.07.6753173120
GAGTGTA696250.07.3924584120
AGAGTGT749300.07.2453547120
AAGAGTG815700.07.1997766120
CGCCGTA223700.07.146576118-119
Produced by FastQC (version 0.11.5)