FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12671055
Sequences flagged as poor quality0
Sequence length63-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA2283950.016.123552120
CATTAAA774600.011.099134120
TCTCGGG25100.010.995236120
TCATTAA839400.010.385253120
ATCATTA951600.09.948852120
GTATCAT1063650.09.707392120
CGTATCA1115900.09.5862120
TATCATT1068850.09.401961120
CCGTATC1253000.09.217223120
ATTAAAA849700.09.059025120
TTAAAAA787000.08.942187120
CGCCGTA1460300.08.820849120
GCCGTAT1353700.08.699981120
GCGTCGG75100.08.3083315120
TCGCCGT1586600.07.891788120
GGTCGCC1742700.07.883758120
TAAAAAA830400.07.846264120
GTCGCCG1665000.07.8444877120
TGGTCGC1844100.07.5836496120
GTGGTCG1969200.07.260301120
Produced by FastQC (version 0.11.5)