FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7819149
Sequences flagged as poor quality0
Sequence length126
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCCCC8650.051.326141
GGGGGGG2750.043.633531
CCCCCCA4500.027.998181
CCCCCCG5250.026.2840061
CCCCCCT5700.023.156391
GGGGGGT2555.904494E-721.1750931
GGGGGGC3303.458208E-718.1806351
GGGGGTC5552.6666385E-814.0531411
GGGGGGA5655.036054E-712.7425351
CCCCCTG10003.6379788E-1211.999221
CCCCCGG10751.4188117E-1010.6039611
GCGTCGG36550.09.520524120
GGGGGAC6453.4079645E-49.3017211
CCCCCAG11656.3919288E-99.2697841
CCCCCAC9251.959328E-69.080491
TCGGTGG165300.08.819696120
GGTGGTC136900.08.633423120
GGGGGTA8456.13099E-58.5201561
CTCGGTG173050.08.424709120
AGATCTC228600.08.240881120
Produced by FastQC (version 0.11.5)