FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18545936
Sequences flagged as poor quality0
Sequence length55-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT386300.09.088712120
GTGGTCG208250.08.184732120
TCGGTGG293600.08.156203120
TGGTCGC192900.08.058212120
ATCTCGG367700.08.0468235120
GAGTGTA548750.07.798053120
AGATCTC389300.07.7082677120
GATCTCG390450.07.63945120
GGTGGTC237750.07.623556120
AGTGTAG513800.07.545875120
GGTCGCC203400.07.5242014120
GTAGATC496100.07.3190937120
TCTCGGT336450.07.1531115120
CGGTGGT294600.07.1506505120
CTCGGTG325450.07.0699224118-119
GTGTAGA512400.07.0394144120
AGAGTGT602850.06.9588757120
TAGGGAA857750.06.92001120
TGTAGAT577550.06.7337437120
AAGAGTG665250.06.7121124120
Produced by FastQC (version 0.11.5)